Source code for pybel.struct.mutation.induction.utils

# -*- coding: utf-8 -*-

"""Functions for inducing graphs by nodes and by edge filters."""

from typing import Iterable, Optional

from ..utils import expand_by_edge_filter
from ...filters.typing import EdgePredicates
from ...operations import subgraph
from ...pipeline import transformation
from ....dsl import BaseEntity

__all__ = [
    'get_subgraph_by_edge_filter',
    'get_subgraph_by_induction',
]


[docs]@transformation def get_subgraph_by_edge_filter(graph, edge_predicates: Optional[EdgePredicates] = None): """Induce a sub-graph on all edges that pass the given filters. :param pybel.BELGraph graph: A BEL graph :param edge_predicates: An edge predicate or list of edge predicates :return: A BEL sub-graph induced over the edges passing the given filters :rtype: pybel.BELGraph """ rv = graph.__class__() expand_by_edge_filter(graph, rv, edge_predicates=edge_predicates) return rv
[docs]@transformation def get_subgraph_by_induction(graph, nodes: Iterable[BaseEntity]): """Induce a sub-graph over the given nodes or return None if none of the nodes are in the given graph. :param pybel.BELGraph graph: A BEL graph :param nodes: A list of BEL nodes in the graph :rtype: Optional[pybel.BELGraph] """ nodes = tuple(nodes) if all(node not in graph for node in nodes): return return subgraph(graph, nodes)