PyBEL-OLS Documentation

A PyBEL [1] extension for building BEL resources with the EBI [2] Ontology Lookup Service.

References

[1]Hoyt, C. T., et al. (2017). PyBEL: a Computational Framework for Biological Expression Language. Bioinformatics, 34(December), 1–2.
[2]Cote, R., et al. (2006). The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries. BMC Bioinformatics, 7, 1–7.

Installation

Get the Latest

Download the most recent code from GitHub with:

$ pip install git+https://github.com/pybel/pybel-ols.git

For Developers

Clone the repository from GitHub and install in editable mode with:

$ git clone https://github.com/pybel/pybel-ols.git
$ cd pybel-ols
$ pip install -e .

Command Line Interface Usage

Command line interface for PyBEL-OLS.

Reference

PyBEL-OLS Reference.

Indices and tables