Source code for pybel.struct.filters.node_predicates.relations

# -*- coding: utf-8 -*-

"""Predicate functions for nodes based on their incident edges' relations."""

from typing import Set

from ...graph import BELGraph
from ....constants import CAUSAL_RELATIONS, RELATION
from ....dsl import BaseEntity

__all__ = [
    "has_in_edges",
    "has_causal_out_edges",
    "has_causal_in_edges",
    "has_causal_edges",
    "has_out_edges",
    "is_causal_central",
    "is_causal_sink",
    "is_causal_source",
    "no_causal_out_edges",
    "no_causal_in_edges",
    "no_out_edges",
    "no_in_edges",
    "no_causal_edges",
]


[docs]def has_in_edges(graph: BELGraph, node: BaseEntity, edge_types: Set[str]) -> bool: """Check if the node has any in-edges in the given set. :param graph: A BEL graph :param node: A BEL term :param edge_types: A collection of edge types to check against """ return any(data[RELATION] in edge_types for _, _, data in graph.in_edges(node, data=True))
[docs]def no_in_edges(graph: BELGraph, node: BaseEntity, edge_types: Set[str]) -> bool: """Check if the node does not have any in-edges in the given set. :param graph: A BEL graph :param node: A BEL term :param edge_types: A collection of edge types to check against """ return all(data[RELATION] not in edge_types for _, _, data in graph.in_edges(node, data=True))
[docs]def has_out_edges(graph: BELGraph, node: BaseEntity, edge_types: Set[str]) -> bool: """Check if the node has any out-edges in the given set. :param graph: A BEL graph :param node: A BEL term :param edge_types: A collection of edge types to check against """ return any(data[RELATION] in edge_types for _, _, data in graph.out_edges(node, data=True))
[docs]def no_out_edges(graph: BELGraph, node: BaseEntity, edge_types: Set[str]) -> bool: """Check if the node does not have any out-edges in the given set. :param graph: A BEL graph :param node: A BEL term :param edge_types: A collection of edge types to check against """ return all(data[RELATION] not in edge_types for _, _, data in graph.out_edges(node, data=True))
[docs]def has_causal_in_edges(graph: BELGraph, node: BaseEntity) -> bool: """Check if the node has any causal in-edges. :param graph: A BEL graph :param node: A BEL term """ return has_in_edges(graph, node, CAUSAL_RELATIONS)
[docs]def no_causal_in_edges(graph: BELGraph, node: BaseEntity) -> bool: """Check if the node does not have any causal in-edges. :param graph: A BEL graph :param node: A BEL term """ return no_in_edges(graph, node, CAUSAL_RELATIONS)
[docs]def has_causal_out_edges(graph: BELGraph, node: BaseEntity) -> bool: """Check if the node has any causal out-edges. :param graph: A BEL graph :param node: A BEL term """ return has_out_edges(graph, node, CAUSAL_RELATIONS)
[docs]def no_causal_out_edges(graph: BELGraph, node: BaseEntity) -> bool: """Check if the node does not have any causal out-edges. :param graph: A BEL graph :param node: A BEL term """ return no_out_edges(graph, node, CAUSAL_RELATIONS)
[docs]def has_causal_edges(graph: BELGraph, node: BaseEntity) -> bool: """Check if the node has any causal out-edges or in-edges. :param graph: A BEL graph :param node: A BEL term """ return has_causal_in_edges(graph, node) or has_causal_out_edges(graph, node)
[docs]def no_causal_edges(graph: BELGraph, node: BaseEntity) -> bool: """Check if the node does not have any causal out-edges or in-edges. :param graph: A BEL graph :param node: A BEL term """ return no_causal_in_edges(graph, node) and no_causal_out_edges(graph, node)
[docs]def is_causal_source(graph: BELGraph, node: BaseEntity) -> bool: """Check if the node has causal out-edges but no causal in-edges. :param graph: A BEL graph :param node: A BEL term """ return no_causal_in_edges(graph, node) and has_causal_out_edges(graph, node)
[docs]def is_causal_sink(graph: BELGraph, node: BaseEntity) -> bool: """Check if the node has causal in-edges but no causal out-edges. :param graph: A BEL graph :param node: A BEL term """ return has_causal_in_edges(graph, node) and no_causal_out_edges(graph, node)
[docs]def is_causal_central(graph: BELGraph, node: BaseEntity) -> bool: """Check if the node has both causal in-edges and also causal out-edges. :param graph: A BEL graph :param node: A BEL term """ return has_causal_in_edges(graph, node) and has_causal_out_edges(graph, node)